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igv Public
Forked from igvteam/igvIntegrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Java MIT License UpdatedJun 5, 2024 -
PMAT Public
Forked from bichangwei/PMATAn efficient assembly tool for plant mitochondrial genome
Python UpdatedMay 31, 2024 -
TEsorter Public
Forked from zhangrengang/TEsorterTEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
Pep8 GNU General Public License v3.0 UpdatedApr 26, 2024 -
TEtranscripts Public
Forked from mhammell-laboratory/TEtranscriptsA package for including transposable elements in differential enrichment analysis of sequencing datasets.
Python GNU General Public License v3.0 UpdatedFeb 27, 2024 -
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TE_Density Public
Forked from sjteresi/TE_DensityPython script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
Python GNU General Public License v3.0 UpdatedFeb 2, 2024 -
Barthea_TE_manuscript Public
Forked from altingia/Barthea_TE_manuscriptscripts and pipelines for TE analysis
Shell UpdatedJan 18, 2024 -
LTR_HARVEST_parallel Public
Forked from oushujun/LTR_HARVEST_parallelAn accessory script to run LTRharvest in parallel modified by @wild-joker.
Perl MIT License UpdatedJan 8, 2024 -
LTR_retriever Public
Forked from oushujun/LTR_retrieverLTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
Perl GNU General Public License v3.0 UpdatedJan 8, 2024 -
TEs_genes_relationship_pipeline Public
Forked from marieBvr/TEs_genes_relationship_pipelineDistribution of TEs and their relationship to genes in host genome
Python GNU General Public License v3.0 UpdatedJun 20, 2023 -
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PAIRADISE Public
Forked from Xinglab/PAIRADISEPaired Replicate Analysis of Allelic Differential Splicing Events
Python UpdatedFeb 21, 2023 -
CodonAdaptationIndex Public
Forked from Benjamin-Lee/CodonAdaptationIndexPython Implementation of Codon Adaption Index
Jupyter Notebook MIT License UpdatedFeb 1, 2023 -
DeepTE Public
Forked from LiLabAtVT/DeepTENeural network classification of TE
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 19, 2022 -
mitofy Public
Forked from dsenalik/mitofyFork of mitofy for linux web interface
Perl GNU General Public License v3.0 UpdatedJun 16, 2021 -
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