A curated list of Links to Research Teams, Journals, Software, Learning Resources for Ecology and Evolution Inspired by awesome-R.

• Awesome Links for Ecology and Evolution

• Journals

• Research Groups/Network

  • Macroecology and Biogeography

  • Biodiversity and Global Change Lab

  • Phylogenetic Comparative Methods ans Evolutionary Ecology

  • Biodiversity and the determinants

  • Theoretical Ecology

  • Functional Ecology

  • Conservation Biology

  • Population Genetics

  • Invasion Ecology

  • Phylogenetic Software Developers

  • Researchers in China

• Data Sources for Ecology and Evolution

• Herbaria around the world

  • Asia

  • Europe

  • North America

• Online Courses

• Software

  • R resources

  • LaTeX

  • Software for Phylogenetic Comparative Methods

  • Software for Population Genetics

  • Software for Ecological Modelling, Biogeography & Conservation

• Other Awesome Lists

• Contributing

• Nature

• Science

• Proc. Nat. Acad. Sci.

• Proc. Royal. Soc. Biolog.

• Methods in Ecology and Evolution\

• Ecology

• Ecological Monographs

• The American Naturalist

• Ecology Letters

• Trends in Ecology and Evolution

• Annual Review of Ecology and Systematics

• Journal of Biogeography

• Diversity and Distributions

• Ecography

• Oikos

• Evolution

• Molecular Ecology

• PLoS ONE

• Scientific Reports

• American Journal of Botany

• Global Ecology and Biogeography

• Conservation Biology

• Journal of Ecology

• Oecologia

• New Phytologist

• Botanical Journal of the Linnean Society

• Taxon

• Journal of Systematics and Evolution

• Plant Diversity

• Biodiversity Science in Chinese

• Guihaia, in Chinese

• Plant Science Journal, in Chinese

• Bulletin of Botanical Research, in Chinese

• Acta Botanica Boreali-Occidentalia Sinica, in Chinese

• Bulletin of Botany

• Acta Ecologica Sinica

• Phylodiversity network

• Evolutionary Community Ecology Group - Université Montpellier II

• Prof. Jetz W. - Yale University, USA

• Prof. Thuiller Lab -Chez-Alice University, France

• Prof. Alexandre F. Diniz-Filho - Brazil

• Dr. Lauren. Buckley - The University of Washintong

• Prof. J. Svenning -The Arhus University

• Dr. Lavergne - Laboratoire d'Ecologie Alpine (LECA) CNRS - Université Grenoble Alpes (UMR 5553)

• Prof. Carsten Rahbek - Univerisity of Copenhagen, Denmark

• Dr. Holger Kreft - University of Goettingen

• Dr. Miguel B. Araújo - PREDICTING THE EFFECTS OF ENVIRONMENTAL CHANGE ON BIODIVERSITY

• Prof. Brown J. - Interdisciplinary Biology, Community Ecology, Biogeography, Allometry

• Prof. Gaston - Conservation at University of Exeter

• Prof. Hawkins B. - University of California, Irvine

• Prof. Robert J. Whittaker - School of Geography and the Environment, University of Oxford

• Dr. Antoine Guisan - Univerisite de Lausanne

• Dr. Linda Beaumount - Department of Biological Sciences, Macquarie University, Australia, Niche Modeling

• Prof. Kerr Lab - University of Ottawa

• Prof. Richard Corlett - Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences

• Prof. J. Losos - Evolution of Lizards, at Havard University

• Prof. Rob Freckleton - Plant population ecology, modelling plant populations, modelling weed populations. Evolutionary ecology, phylogenetic comparative methodology and its application to ecological problems.

• Prof. A. Purvis Lab - Natural History Museum, London, UK

• Prof. J. Felsenstein - University of Washington

• Prof. McPeek - how communities of organisms are assembled and structured across the landscape

• Prof. Wiens - Evolution of adaptation of world's amphibians

• Prof. D. Schluter - UBC

• Dr. Weir Lab - University of Toronto

• Dr. Stephen Smith Lab

• Prof. Garland Lab -UC Riverside

• Dr. T. Ingram -

• Dr. Vincent Devictor

• Prof. David Jablonski

• Dr. C. Graham - Stony Brook University

• Prof. Richard Glor

• Dr. Heard S. - Understanding ecological controls on the evolution of biodiversity

• Prof. Gittleman Lab - INSTITUTE OF ECOLOGY, ECOLOGY BUILDING, UNIVERSITY OF GEORGIA, ATHENS, GA 30602-2202

• Prof. Wainwright Lab at UC Davis

• Prof. Lovette

• Dr. Sandrine Pavoine

• Dr. Christine Meynard

• Dr. Fordyce Lab

• Dr. Brian O'Meara Lab

• Dr. F. Bokma

• Prof. M. Butler

• Dr. G. Hunt

• Dr. Rabosky D.

• Prof. M. Willig

• Dr. W. John Kress

• Prof. Agapow P.

• Dr. Michael T Monaghan - Leibniz-Institute of Freshwater Ecology and Inland Fisheries (IGB)

• Prof. Mooers A.

• Prof. Mike Crisp

• Prof. Ives A. Lab

• Prof. Bolnick Lab - BOLNICK LAB AT THE UNIVERSITY OF TEXAS AT AUSTINEco-Evo-Immuno Dynamics

• Prof. Oakley Lab

• Dr. Alexei Drummond* BEAST

• Dr. Christoph Heibl

• Prof. Wayne Maddison Lab

• Dr. Stacy Smith Lab

• Dr. M. Cadotte

• Dr. Hardy Research Group

• Dr. Mark Vellend

• Dr. Petr Pyšek - Department of invasion ecology Botanický ústav Akademie věd ČR/Institute of Botany, Academy of Sciences of the Czech Republic

• Dr. Cam Webb

• Prof. Jérôme Chave

• Dr. Liza Comita

• Dr. Wil Cornwell

• Dr. Nate Swenson

• Prof. N. Mouquet

• Dr. Ackerly Lab

• Dr. Cavender-Bares Lab

• Prof. Peres-Neto - Community and Quantitative Ecology

• Dr. Steve Kembel

• Prof. B. Enquist

• Prof. Felisa Smith Lab - University of New Mexico

• Prof. Pierre Legendre

• Dr. Helene Morlon

• Dr. Vamosi

• Prof. He Fangliang

• Prof. Loreau

• Prof. Tuomisto

• Dr. Franck Jabot

• Prof. Bill Kunin

• Dr. François MUNOZ - Tropical plant comminities, France

• Prof. K. F. Davies Lab

• Prof. Jonathan M. Chase Lab - Process Governing species assembly over various scales

• Dr. Richard Davies -the evolutionary and ecological determinants of biodiversity distribution

• Prof. J. Green Lab

• Dr. Janne Soininen

• Prof. Jacob R. Goheen

• Dr. Simon A. Queenborough

• Dr. Nathan Kraft - UCLA

• Prof. Holyoak

• Prof. Hurbert Lab

• Prof. Amy Angert - at the interface of ecology and evolutionary biology

• Prof. Pedro Peres Neto

• Prof. Cahill J. - U. Alberta

• Dr. Moles A. New Zealand

• Prof. John Wakeley - Harvard

• Prof. R. Primack - Boston

• Dr. Marco Pautasso

• Prof. Martin Sykes at Lund

• Prof.Resit Akakaya USA

• Dr. Lee Hannah - Climate Change Biology

• Pär Ingvarsson

• Dr. Siobhan Cooke - Evolution of new world's monkey

• Prof. Cajsa Lisa Anderson

• Prof. Bruce Walsh

• Prof. Xiao-Ru Wang

• Prof. Jonathan Levine

• Amphibia Evolution Lab (Belgium)

• Prof. Huang Shuangquan - Wuhan University

• Prof. Kunfang Cao - Guangxi University

• Prof. Chen Xiaoyong - Eastern China Normal University

• Prof. Wang Xihua - Eastern China Normal University

• Prof. Zhou Shurong - Fundan University

• Prof. Mingjian Yu - Zhejiang University

• Prof. Guangze Jin - Northeast Forestry University

• Prof. Junhua Hu - Chengdu Institute of Biology, Chinese Academy of Sciences

• Dr. Huijie Qiao

• Prof. Keping Ma -IBCAS

• Prof. Xuejun Ge - SCBG

• Prof. Chen Zhiduan -IBCAS

• Prof. Wang Zhiheng - Peking University

• Dr. Shaopeng Li - Georgia Institute of Technology, Atlanta

• Dr. Shengbin Chen - Nanjing Institute of Environmental Sciences, Ministry of Environmental Protection

• Dr. Jihong Huang - Chinese Academy of Forestry

• Dr. Xiaojuan Liu -IBCAS

• Dr. Lingfeng Mao - University of Alberta

• Dr. Jian Zhang - East China Normal University

• Dr. Gang Feng - Inner Mongolia University

• Dr. Nancai Pei - Research Institute of Tropical Forestry, the Chinese Academy of Forestry

• Dr. Mi Xiangcheng -IBCAS

• Editorial Committee of JSE

• Editorial Committee of Biodiversity Science

• Editorial Committee of Chinese Journal of Plant Ecology

• gbif

• Genbank

• The Plantlist

• Tropicos

• DRYAD

• CTFS

• CFBIO

• Gentry's Transect Dataset

• Maps of Trees of North America

• TimeTree - The divergence Time between two taxa

• TRY - a global database of plant traits

• Flora of China

• Flora Reipublicae Popularis Sinicae

• Flora of Taiwan

Contents of this section originally from Hong Kong Herbarium

Please also refers to:

• Selected Links of botanical Links from the University of Florida Herbarium

• Index Herbariorum

• Chinese National Herbarium, Institute of Botany, CAS, Beijing - PE

• Kunming Institute of Botany, CAS, Yunnan - KUN

• National University of Taiwan, Taipei - TAI

• Herbarium, Institute of Botany, Academia Sinica, Taipei - HAST

• Makino Herbarium - MAK

• Central-National-Herbarium, India - CNH

• Philippine National Herbarium, Manila -PNH

• Herbarium, National University of Singapore - SINU

• The Forest Herbarium, Thailand - BKF

• University of Malaya Herbarium - KLU

• The Natural History Museum, London, UK (“British Museum”) - BM

• Herbarium of the Royal Botanical Gardens, Kew, UK - K

• Herbarium of the Royal Botanical Gardens, Edinburgh, Scotland - E

• Herbarium of the Botanical Museum Berlin-Dahlem, Germany B

• Natural History Museum of Florence (Firenze), Italy - FI

• Herbarium of the New York Botanical Garden, Bronx, NY - NY

• Herbarium of the Missouri Botanical Garden, St. Louis, MO - MO

• The University and Jepson Herbaria, University of California, Berkeley, CA - UC

• US National Herbarium, The Smithsonian Institutions, Washington DC - US

• Harvard University Herbaria, Cambridge, MA - HUH

• University of Florida Herbarium - FLAS

• Bayesian Inferences Lectures by P. Lam

• Review Course: Markov Chains and Monte Carlo Methods

• Bayesian Methods

• Machine Learning

• Doing Bayesian Data Analysis

• Doing Bayesian Data Analysis

• Stat 295 Bayesian Inferences

• Bayesian Analysis for the Social Sciences

• Statistical Phylogeography

• Integrative Biology at UC Berkeley, Principles of Phylogenetics: Ecology and Evolution

• Principles of Phylogenetics: Systematics

• EEB courses on Ecology

• Phylogenetics (EEB)

• Principles and Methods in Systematic Biology

• Quantitative methods in Ecology and Evolution by Prof. Schluter (UBC)

• Principles and Practice of Phylogenetic Systematics

• R workshop for phylogenetic comparative methods

• Phylogenetic Comparative Methods

• Biodiversity analysis by Dr. He Fangliang

• Statistical Methods in Ecology

• Statistics for Ecology and Evolution 2008 By Dr. Jack Weiss

• An Introduction to R: Software for statistical modelling and Computing, Course Notes

• Introduction to Statistical Computing by Ross Ihaka

• Biostatistics-Statistical Computing by Gonçalo

• Basic Population Genetics (and a plenty of resources)

• Biology Textbook

• The Online Biology Book

• Coalescent Theory and Applications

• R project

• Bioconductor

• R Free Documents

• Quick R

• The R Graphical Manual

• R Examples

• R Resources at NCEAS

• R-phylo Wiki

• Comparative methods in R - Ilhabela

• R Hackathon

• Analysis of Community data using R

• F. Farrell's R resources

• R Programming for APTS Students at Oxford University by Prof. R. Ripley

• Statistics with R

• Crantastic

• R-Tips

• Create Maps with R geographical Classes

• Applied Spatial Statistics in R

• r-popgen-hackathon

• Analysis of Discret Data

• Data Mining by Dr, Dr. Michael Hahsler

• R Studio

• R Markdown

• TeXLive

• MikTeX

• Chinese LaTeX

• Latex Course in Chinese

• An Excellent Equation Editor

• Seqtrace Extracting DNA sequences from ab1 files.

• Tree Thinkers

• Joe Felsenstein's comprehensive list for Phylogenetic software

• Software by Agapow

• PAUP*

• CLUSTAL

• MUSCLE

• MrBayes

• BEAST, FigTree, PhyloGen and Tracer

• MEGA

• r8s - not available at Mike's website (http://loco.biosci.arizona.edu/r8s/)

• PATHd8

• TimeTree - The divergence Time between two taxa, widely used in molecular dating.

• PhyloBayes

• multidivtime

• Mesquite

• Phylocom

• APE

• Lagrange

• Lagrange

• laser

• Biolinux

• Statistical Phylogeography

• CREATE

• PGDSpider

• popabc: infer historical demographic parameters

• DIYABC Approximate Bayesian Computation for inference on population history using molecular markers

• LAMARC - Likelihood Analysis with Metropolis Algorithm using Random Coalescence

• MIGRATE-N estimation of population sizes and gene flow using the coalescent

• PhyloMapper

• SSA Inference of Maximum Likelihood phylogenetic trees using a stochastic search algorithm

• BEST Bayesian Estimation of Species Trees

• BEAST Tracer, BEAGLE

• GEODIS: A tool to perform the nested clade phylogeographic analysis (NCPA)

• Diffusion Approximation for Demographic Inference

• Genetic Landscapes GIS Toolbox: Tools to create genetic divergence and diversity landscapes in ArcGIS

• TESS 2.3: Bayesian Clustering using tessellations and Markov models for spatial population genetics

• Geneland: process individual multilocus genetic data to detect population structure

• Software by Rannala research Group

• Structurama

• Structure

• popABC

• msBayes

• Forward Selectoin

• SAM

• DIVA-GIS

• Biodiverse

• C-Plan

• LQGraph

• MARXAN

• MultCSync

• Surrogacy

• ZONATION

• WORLDMAP

• EcoSim

• EstimateS

• Mid-domain Null

• PAST

• RangeModel

• BIOMAPPER

• DesktopGarp

• Lifemapper

• GRASP

• MAXENT

• GIS Software and Data

• Evolutionary Biology & Ecology Universitel Libre de Bruxelles

• awesome-awesomeness

• lists

Your contributions are always welcome!

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