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1. local-jlens-esm local-jlens-esm Public

   Local Jacobian lens analysis of missense variant-effect scoring in ESM

   HTML

2. R-Notebook R-Notebook Public

   A VSCode extension to run R Markdown (.rmd) files and Jupyter Notebook (.ipynb) files

   TypeScript 1

3. PRScsU PRScsU Public

   Forked from getian107/PRScs

   GPU-accelerated Polygenic prediction via continuous shrinkage priors

   Python

4. deepvariant deepvariant Public

   Forked from google/deepvariant

   Extension of Google's DeepSomatic with the following features: (1) selective layer fine-tuning of the CNN using Keras, and (2) non-tumor sample allele frequency and variant class probabilities as p…

   Python

5. Toolbox-for-PRS-estimation Toolbox-for-PRS-estimation Public

   A Docker-based DNANexus applet with GitHub CI/CD for running polygenic risk score (PRS) predictions at biobank scale (n~300k). Built on top of [PRScsU](https://github.com/zitiansunshine/PRScsU), th…

   Shell

6. HuGE-Score-Scraper HuGE-Score-Scraper Public

   A docker for extracting the Human Genetic Evidence scores from Common Metabolic Diseases Knowledge Portal (https://hugeamp.org)

   Python