Extremely fast Query Engine for DataFrames, written in Rust

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.

Command line csv viewer

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

A new high-resolution long-read metagenome assembler for even noisy reads

Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all

A very fast interval tree data structure

Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.

Fast approximate string searching

Fast DNA search and [host] depletion using minimizers

Fast and exact gap-affine partial order alignment

A Rust library providing fully dynamic sets of k-mers with high locality

Rust-based sra-tools

A SIMD-accelerated library to compute random minimizers

Transfer HiFi read mappings from their own assembly contigs to a standard reference

A small, auxiliary index to massively improve parallel fastq parsing

Reference implementations of minimizer schemes to go with the mod-minimizers paper.

Amplicon sequencing variants from 16s ONT R10.4 / HiFi long reads

Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.

Hardware go brrr bounded context suffix array construction algorithm

Robust individual and aggregate checksums for nucleotide sequences

String algorithm visualizations

A Rust library for building modular, fast and compact indexes over genomic data

Rust rewrite of SSHash (unfinished & unmaintained)

longcallR_nn is a variant caller specifically designed for long-read RNA-seq data, utilizing a ResNet50 model.

Some tools in Rust for learning