⚡ ♒ Rapid prokaryotic genome annotation

Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/

A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

🔬 ♌ Bacterial ribosomal RNA predictor

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

Discovering known and novel miRNAs from small RNA sequencing data

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

Mapping pipeline for data generated using Arima-HiC

Phylogenetic and taxonomic analysis for genomes and metagenomes

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

EDGE is a highly adaptable bioinformatics platform that allows laboratories to quickly analyze and interpret genomic sequence data.

PacBio hybrid error correction through iterative short read consensus

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniP…

NovoGraph: building whole genome graphs from long-read-based de novo assemblies

Multi-level visualization of genomic statistical variables on rectangular chromosomes

GATB Minia assembly pipeline

Scripts and documentations on the MCSC decontamination method

lncRNA分析流程

Not the official ITSx repository, please visit https://microbiology.se/software/itsx/