Python library for the book, Stochastic modelling for systems biology, third edition

A unifying framework for biomedical research knowledge graphs

Repository devoted to the ASKEM TA1 Working Group Demo for Oct 2022

🚢 Generate publication-ready authorship lists via Google Sheets and more

A site describing LSP compounds served at https://labsyspharm.github.io/lspci/

A simple CLI for BioNetGen

RNM to RBM translation project.

Rapid prototyping coalition for SARS-CoV-2 tissue infection dynamics. (integrated model)

Sparse Signaling Pathway Sampling: MCMC for signaling pathway inference

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

Framework for assembling causal probabilistic models from text and software.

Curation of Neurodegeneration in Biological Expression Language (CONIB)

BEL Enhancement Proposals

A tool for thinking in systems

Fast, lightweight graphset operation library

Training of logic models of signalling networks using prior knowledge networks and perturbation data.

collaborative assistant for biocuration

Reach Biomedical Information Extraction

Process BEL (Biological Expression Language) with ruby.

Natural Language Processors