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Commits on Jun 8, 2014

• Generalize retrieval of VEP CSQ information to use fields mapped from header instead of an explicit order. This is meant as a first step towards more general VEP support including dbNSFP annotations

  chapmanb

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Commits on Mar 5, 2014

• handle keyerror for new snpEff impact terms

  

  udp3f

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Commits on Mar 24, 2013

• pep8

  

  arq5x

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Commits on Aug 24, 2012

• Merge pull request #41 from udp3f/master

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  arq5x

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• added try and except clauses to handle unknown impact names

  

  Uma Paila

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• Merge pull request #39 from udp3f/master

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  arq5x

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Commits on Aug 22, 2012

• remove condel

  

  Uma Paila

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Commits on Aug 21, 2012

• test on snpEff major version

  

  Aaron Quinlan

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• use snpEff version number to drive aa_length

  

  Aaron Quinlan

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Commits on Jun 13, 2012

• Handle snpEff impacts added by GATK VariantAnnotator

  chapmanb

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Commits on May 3, 2012

• most severe impact info added to variant table

  

  Uma Paila

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Commits on Apr 30, 2012

• edited a comment line

  

  Uma Paila

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Commits on Apr 12, 2012

• Big commit.

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  Uma Paila

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Commits on Apr 1, 2012

• added support for VEP. use -t to choose func annotation tool

  arq5x

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