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Commits on Jun 17, 2014

• Provide automated annotation of extra fields in VEP file inputs. Additional fields are extracted, classified by type, formatted into a BED file and added to final GEMINI database using the standard…

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  chapmanb

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Commits on Jun 11, 2014

• fix impact term

  

  udp3f

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Commits on Apr 29, 2014

• SO mapping added

  

  udp3f

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Commits on Mar 24, 2014

• minor

  

  udp3f

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Commits on Mar 7, 2014

• synchronize priorities for similar terms

  

  udp3f

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Commits on Mar 5, 2014

• handle new snpEff impact terms without code break

  

  udp3f

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Commits on Feb 17, 2014

• Added SPLICE_REGION to snpEff effects

  dgaston

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Commits on Sep 27, 2013

• handle codon change vs distance

  

  Uma Paila

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Commits on Apr 12, 2013

• change logic for prioritizing biotype in severe_impacts

  

  Uma Paila

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Commits on Mar 24, 2013

• pep8

  

  arq5x

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Commits on Jan 14, 2013

• None type added to impacts and is_coding revised

  

  Uma Paila

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Commits on Jan 7, 2013

• [BUG] refactor logic for is_coding, is_exonic, is_lof.

  

  arq5x

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Commits on Dec 28, 2012

• tweaks to snpEff exonic logic

  

  arq5x

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Commits on Aug 24, 2012

• Merge pull request #39 from udp3f/master

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  arq5x

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Commits on Aug 22, 2012

• remove condel

  

  Uma Paila

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Commits on Aug 21, 2012

• test on snpEff major version

  

  Aaron Quinlan

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• use snpEff version number to drive aa_length

  

  Aaron Quinlan

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Commits on Aug 8, 2012

• aa_length and pathway tools added

  

  Uma Paila

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Commits on Jun 13, 2012

• Handle snpEff impacts added by GATK VariantAnnotator

  chapmanb

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Commits on May 3, 2012

• most severe impact info added to variant table

  

  Uma Paila

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Commits on Apr 1, 2012

• added support for VEP. use -t to choose func annotation tool

  arq5x

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