Notes and workarounds for accessing the Mac OS X pasteboard in tmux sessions. Note: The pu branch (“Proposed Updates”) may be rewound without notice.

Portable file system cache diagnostics and control

EXT4 implementation for FUSE

Near-optimal RNA-Seq quantification

UCSC Genome Browser source. "beta" is released version / "master" is testing.

An efficient trie implementation.

A C library for statistical and scientific computing

A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)

A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

Small utilities for working with fastq sequence files.

A 3'-end adapter contaminant trimmer

HAT-Trie for Python

Compressing next-generation sequencing data with extreme prejudice.

external memory data structure playground

Simulate short-reads datasets using probabilistic models

async C client library for doozerd

A faster, reduced-precision logarithm function.

computational biology grab-bag: messy one-off scripts for a variety of tasks

A paper describing and evaluating the quip compression algorithm.