Easy interactive web applications with R

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

Multi-Omics Factor Analysis

Latent Embedding Multivariate Regression

Bioconductor package "polyester", devel version. RNA-seq read simulator.

Embed subplots in ggplot2 graphics in R

Fixed Rank Kriging with big data

Tools for visualizing genomics data

Spatially aware dimension reduction for spatial transcriptomics.

R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data

The R programmatic interface to Synapse services

nnSVG: scalable method to identify spatially variable genes (SVGs) in spatially-resolved transcriptomics data

An R package for feature selection in topological spaces.

Code to reproduce analysis from Cook et al., bioRxiv, 2023

This repository contains R-scripts (functions) for simulation of multinomial-multinomial samples.