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Feature Request: Easier Snakemake Resource Management.

Status: Open.

#654 In gagneurlab/drop;

· nickhsmith opened on Nov 26, 2025

Rows (gene IDs) in pipeline's Rds expression counts and rows in the recommended external geneCounts.tsv.gz are in different order

Status: Open.

#651 In gagneurlab/drop;

· sitems opened on Nov 10, 2025

Gene position reorder at mergeCountsR

Status: Open.

#643 In gagneurlab/drop;

· marcDabad opened on Oct 9, 2025

MissingOutputException error in rnaVariantCalling

Status: Open.

#640 In gagneurlab/drop;

· helenine opened on Sep 22, 2025

Merge error for aberrant expression module when using Murdock external count matrix

Status: Open.

#639 In gagneurlab/drop;

· abhayr20 opened on Sep 18, 2025

Detection of overlapping snRNAs in OUTRIDER

Status: Open.

#638 In gagneurlab/drop;

· carlalbc opened on Sep 18, 2025

optimHyperParams` function not found when running FRASER2 hyperparameter fitting

Status: Open.

#634 In gagneurlab/drop;

· akosycarz opened on Aug 13, 2025

Error in mae module

Status: Open.

#630 In gagneurlab/drop;

· helenine opened on Aug 8, 2025

HDF5 dataset ".o5_o3_psi5_psi3_dimnames/2" already exists

Status: Open.

#621 In gagneurlab/drop;

· ChiaraF32 opened on Jul 3, 2025

Unzip required for bioconda to run demo in biocontainer.

Status: Open.

#619 In gagneurlab/drop;

· brechtmann opened on Jul 1, 2025

Error in rownames - AberrantExpression module

Status: Open.

#606 In gagneurlab/drop;

· Roshanshafiha opened on Apr 9, 2025

AbberantExpression module error

Status: Open.

#605 In gagneurlab/drop;

· Roshanshafiha opened on Apr 8, 2025