Commits

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Commits on Jun 17, 2014

Provide automated annotation of extra fields in VEP file inputs. Additional fields are extracted, classified by type, formatted into a BED file and added to final GEMINI database using the standard…
chapmanb
committed
0fa4285

Commits on Jun 8, 2014

Generalize retrieval of VEP CSQ information to use fields mapped from header instead of an explicit order. This is meant as a first step towards more general VEP support including dbNSFP annotations
chapmanb
committed
5398efd

Commits on Apr 29, 2014

SO defaulted to VEP impact terms
udp3f
committed
7169aeb

Commits on Mar 24, 2014

support biotype, revise is_lof, is_exonic
udp3f
committed
943f0eb

Commits on Mar 15, 2014

add aa_length to VEP annotation
udp3f
committed
70c718d

Commits on Mar 7, 2014

synchronize impact terms
udp3f
committed
c4effd4

Commits on Mar 24, 2013

pep8
arq5x
committed
3b6004f

Commits on Jan 14, 2013

coding logic revisited
Uma Paila
committed
3f06802

Commits on Sep 13, 2012

fixed a priority_code bug in one of VEP impacts
Uma Paila
committed
778a4e9

Commits on Aug 24, 2012

incorporated new impacts and updated to latest version consequences
Uma Paila
committed
a721b39

Commits on Aug 22, 2012

remove condel
Uma Paila
committed
303b198

Commits on Aug 21, 2012

biotype column added to both tables
Uma Paila
committed
b82e6f1

Commits on Aug 8, 2012

aa_length and pathway tools added
Uma Paila
committed
fccac5c

Commits on Jul 25, 2012

VEP: ensembl_ids returned for genes where HGNC is None
Uma Paila
committed
ba34b2b
just a commit
Uma Paila
committed
7d54ded

Commits on Jul 24, 2012

null initial commit
Uma Paila
committed
7981d9f
new master
Uma Paila
committed
c8e5683

Commits on May 3, 2012

most severe impact info added to variant table
Uma Paila
committed
a49c53b

Commits on Apr 12, 2012

Big commit.
Uma Paila
committed
5eeffd0

Commits on Apr 3, 2012

forgot to add vep.py to version control
arq5x
committed
c14bca6

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