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12 stars written in Java
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Cracking the Coding Interview, 5th Edition

Java 5,146 2,281 Updated Jun 26, 2023

Py4J enables Python programs to dynamically access arbitrary Java objects

Java 1,285 231 Updated Dec 11, 2025

align and compare tables

Java 902 76 Updated Mar 17, 2026

Stratosphere is now Apache Flink.

Java 200 84 Updated Dec 16, 2023

Bio4j abstract model and general entry point to the project

Java 122 19 Updated Dec 16, 2016

AQUAS TF and histone ChIP-seq pipeline

Java 112 40 Updated Jun 21, 2022

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

Java 93 31 Updated Oct 3, 2024

Reaction Decoder Tool (RDT) - Atom Atom Mapping Tool

Java 81 24 Updated Apr 5, 2026

RTG Core: Software for alignment and analysis of next-gen sequencing data.

Java 49 11 Updated May 27, 2025

A configurable de novo assembly pipeline

Java 29 6 Updated Jun 29, 2016

Next generation sequencing (NGS/HTS) tools.

Java 19 18 Updated Jan 25, 2024

Collection of scripts for working with Wiggle files and analyzing sequencing data

Java 17 10 Updated Feb 9, 2019