Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

Reference-guided transcript discovery and quantification for long read RNA-Seq data

R package for analyzing single-cell RNA-seq data

Brings bulk and pseudobulk transcriptomics to the tidyverse

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

Multiome GRN inference.

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

From geospatial to spatial -omics

Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

R package for pathway analysis in scRNA-seq data

Multi-sample Unified Discriminant ANalysis

Transcriptomics Visualization R package.

Easily install and load packages from the tidyomcis ecosystem

COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.

Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.

Inference of cell-cell communication from single-cell RNAseq data

Cell-type Relationship Analysis Workflow Done Across Distances

Isoform-level functional RNA-Seq analysis 🧬