Hierarchical, iterative clustering for analysis of transcriptomics data in R

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data

An R package to plot interactive three-way differential expression analysis

Single cell RNA-seq analysis for transcriptomic type characterization

Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, dire…

spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples

OmicsSuite website for releasing new version.

feseR: Combining feature selection methods for analyzing omics data

The blog of tidyomics

BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data

Materials used during #NGSchool2017

Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

A comprehensive analysis tool for Ribo-seq and small RNA-seq data

scBubbletree: quantitative tool for visual exploration of scRNA-seq data

Ontogenetic shifts in symbiotic and metabolic state in coral early life history

Joint UMAP embedding and clustering of proteomic and transcriptomic data

Review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing.'

Reproducibility of "Alternative start and termination sites of transcription drive most transcript isoform differences across human tissues."

ImaGene: A multi-omic ML/AI software with guided operational reports and supporting files