Fast heuristic methods of detecting adaptive evolution in protein-coding genes.
Ram, Liberman & Feldman (2018) Vertical and Oblique Transmission under Fluctuating Selection, PNAS
My teaching materials from an exam-prep workshop for a second year ecology course at the University of Cape Town
Chaotic neural network library. The core of the ChNN project.
Analysis of mistranslation for the article: "Directed Evolution of rRNA Improves Translation Kinetics and Recombinant Protein Yield" Nat Commun 12, 5638 (2021)
An evolution simulation inspired by Biogenesis on Sourceforge.
Game engine in C++ with a focus on evolution simulations
This code is to experiment with evolution.
Calculate conditional probability distributions of extant sequences given a phylogenetic tree, sequence alignment, and evolutionary model.
SEEPS: Sequence Evolution and Epidemiological Process Simulator
A simple game where very basic evolution learning teaches circles how to jump over blocks.
Cnidarian Mpeg1 protein sequences used to analyze gene diversity
Alignments and trees from the Sorribes et al Review about CCC1
This repository includes all the analyses related to the influence of environment in the early stages of evolution in the synthetic polyploid species Arabidopsis kamchatica
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