Graph theory analysis of brain MRI data

R interface to the ANTs biomedical image processing library

Qoala-T is a supervised-learning tool for quality control of FreeSurfer segmented MRI data

R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.

Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

Label the brain MNI coordinate by AAL/BA system

Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data

GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.

The QDECR package for vertex-wise analyses in R

Software Tool for the Analysis and Visualization of MRI images of the brain

tacmagic: PET Analysis in R

Fast and easy visualization of fMRI data quality using carpet plots.

R implementation of registration fusion method for MNI152 - 305 mapping.

An alternative R package for advanced normalization tools (ANTs)

Code to reproduce results from Labache, L., et al. 2023. Language network lateralization is reflected throughout the macroscale functional organization of cortex. DOI: 10.1038/s41467-023-39131-y

Scripts to process preclinical obsessive compulsive disorder data

Script for immunology and cognition analyses in UK Biobank

Gradle framework for deriving a tongue model from MRI data.

Kaggle competition: Diagnose schizophrenia using multimodal features from MRI scans.

Given a brain coordinate or cluster in MNI305 space, compute MNI152 and Talairach coordinates and find the closest brain regions.