Batch download the BigBrain slices and more
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Oct 9, 2017 - Shell
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neuroscience
Here are 27 public repositories matching this topic...
A modified FSL version for use with Slurm
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Mar 14, 2018 - Shell
Common Docker Image for the Dosenbach and Greene Labs
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Apr 16, 2018 - Shell
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Jun 12, 2018 - Shell
Software for use at the University of Arizona SCAN Lab
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Jul 17, 2018 - Shell
Docker container for FiberNavigator for Brainlife.io
neuroscience mri brain diffusion-mri connectome tractography white-matter neuroscience-data mri-data
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Nov 24, 2018 - Shell
Scripts and pipeline for the handling of scripts from DICOMS to 4DFP and then analysis.
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Jul 11, 2019 - Shell
Pipeline computing volumes statistics for different brain lobes according to a atlas.
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May 21, 2020 - Shell
This reading list is centered around the practical application of linear dynamical systems models to predict neural data
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Dec 1, 2021 - Shell
A Whole-Brain 3D Myeloarchitectonic Atlas: Mapping the Vogt-Vogt Legacy to the Cortical Surface
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Feb 8, 2023 - Shell
A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.
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Mar 3, 2023 - Shell
A sample neuroimaging pipeline for the fMRI data collected by the Aging Brain Cohort.
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May 10, 2023 - Shell
Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"
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Jul 17, 2023 - Shell
Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"
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Jul 17, 2023 - Shell
Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"
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Jul 17, 2023 - Shell
Generate a package-manager-friendly mouse brain atlases collection.
linux packaging neuroscience gentoo mri portage 3d-printing brain-imaging package-management mouse-brain-mri
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Aug 4, 2023 - Shell
An innovative and collaborative solution for setting up and executing Jupyter Notebooks on High-Performance Computing (HPC) clusters, tailored for neuroscience data processing workflows.
neuroscience jupyter-notebooks data-processing mamba workflow-automation collaborative-research nipype conda-environment
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Aug 23, 2023 - Shell
Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.
pipeline neuroscience mri software neuroimaging aging qsm quantitative-susceptibility-mapping brain-iron
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Dec 11, 2023 - Shell
The idea behind this website is to make available all the resources I have gathered/created over the years make other people's life easier.
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Jan 13, 2024 - Shell
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