🧠 Capture context seamlessly across devices and projects, enabling AI to maintain continuity in your digital brain system.

Pipeline for Cortical and Subcortical SC and FC

Shell scripts pipelines to create DTI templates

3D brain registration for LSFM

A Python distribution for neuroscience based on conda 🧠🐍

Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship

Alcohol study DTI Analyses

The idea behind this website is to make available all the resources I have gathered/created over the years make other people's life easier.

Ironsmith is a comprehensive, fully automated pipeline for creating and processing Quantitative Susceptibility Maps (QSM), extracting QSM based iron concentrations from subcortical and cortical brain regions and evaluating the quality of QSM data using SNR measures and assessment of outlier regions on phase images.

An innovative and collaborative solution for setting up and executing Jupyter Notebooks on High-Performance Computing (HPC) clusters, tailored for neuroscience data processing workflows.

Generate a package-manager-friendly mouse brain atlases collection.

Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"

Scripts related to "Associations between attention-deficit hyperactivity disorder (ADHD) symptom remission and white matter microstructure: A longitudinal analysis"

Scripts related to "White Matter Microstructure in Attention-Deficit/Hyperactivity Disorder: A Systematic Tractography Study in 654 Individuals"

A sample neuroimaging pipeline for the fMRI data collected by the Aging Brain Cohort.

A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.

A Whole-Brain 3D Myeloarchitectonic Atlas: Mapping the Vogt-Vogt Legacy to the Cortical Surface

This reading list is centered around the practical application of linear dynamical systems models to predict neural data

Gentoo Science Overlay

Pipeline computing volumes statistics for different brain lobes according to a atlas.