Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/

Processing NEON soil microbe marker gene sequence data into ASV tables.

A repository with a general dada2 pipeline for amplicon processing

Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output

all my dirty r-scripts

A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

A pipeline to analyse marine fish amplicon data

🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

Amplicon sequencing workflow with snakemake and dada2 (MiSeq data)

Workflow stages and data for Morando, Magasin et al. 2025

DADA2 pipeline for nitrogenase (nifH) amplicon sequences (Illumina paired-end)

National workshop on microbiome informatics

Accurate sample inference from amplicon data with single nucleotide resolution

A workflow for processing CCS reads of AMF to ASVs using DADA2

En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.

Generalized dada2 workflow. Refer to the wiki for help and troubleshooting.

Code and repository links for Klein & Frühe et al. 2024

The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.