Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
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Jan 18, 2021 - Shell
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dada2
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Automated QIIME 2 pipeline for 16S rRNA gene amplicon analysis of the gingival microbiome in IBD research.
reproducible-research bioinformatics-pipeline ibd shell-script dada2 asv qiime2 16s-rrna-analysis oral-microbiota gingiva-microbiome
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Apr 4, 2026 - Shell
Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.
unite high-throughput-sequencing 16s soil-sample rrna taxonomy-assignment its microbiome-analysis mafft dada2 marker-gene-analysis greengenes qiime2 microbiome-workflow fasttree microbiome-analysis-pipelines soil-microbiome rhizospheres
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Feb 4, 2025 - Shell
QIIME2 Microbiome Analysis Workflow
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May 16, 2025 - Shell
Metabarcoding analysis pipeline, using DADA2 and qiime2
bioinformatics bioinformatics-pipeline metabarcoding dada2 cutadapt qiime2 taxonomic-profiling metabarcoding-data
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Jan 9, 2024 - Shell
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