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Starred repositories

16 results for source starred repositories written in Shell
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Papers from the computer science community to read and discuss.

Shell 105,098 6,323 Updated Mar 26, 2026

Bash Automated Testing System

Shell 5,961 476 Updated Feb 15, 2026

A walkthrough for optimal Audiobook experience using Plex

Shell 1,783 55 Updated May 20, 2024

A Slurm cluster using docker-compose

Shell 490 256 Updated Apr 9, 2026

EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data lif…

Shell 138 59 Updated Apr 8, 2026

Variant Interpretation Pipeline

Shell 49 9 Updated Apr 10, 2026

A GitHub Action to deploy a static site on GitHub Pages.

Shell 42 7 Updated Sep 22, 2025

A simple Bash script for making local backups with different views.

Shell 35 5 Updated Apr 25, 2019

Application for semi-automated genomic annotation.

Shell 18 8 Updated Jan 29, 2026

A methodological framework to conduct a calibrated gene-based rare variant association test by leveraging the genome aggregation database (gnomAD) as an external control dataset

Shell 9 1 Updated Mar 4, 2023
Shell 4 1 Updated Apr 2, 2024

Genotyping Array Pipeline

Shell 3 8 Updated Oct 24, 2024

Easy to run pipeline for CNV calling

Shell 1 1 Updated Mar 5, 2026

This repo contains a workflow that takes sequencing output from an Illumina sequencer, uses bcl2fastq to demultiplex reads and convert them to FASTQ format, and runs basic quality control.

Shell 1 1 Updated Jan 13, 2025

derfinder analysis of LIBD post-mortem brain data (36 samples)

Shell 1 1 Updated Aug 23, 2019