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Starred repositories

17 stars written in Shell
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Papers from the computer science community to read and discuss.

Shell 101,175 6,196 Updated Oct 10, 2025

Bash Automated Testing System

Shell 5,705 455 Updated Nov 25, 2025

A walkthrough for optimal Audiobook experience using Plex

Shell 1,735 54 Updated May 20, 2024

A Slurm cluster using docker-compose

Shell 431 236 Updated Nov 23, 2025

EDAM is an ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data lif…

Shell 134 59 Updated Nov 20, 2025

Variant Interpretation Pipeline

Shell 45 9 Updated Dec 18, 2025

A GitHub Action to deploy a static site on GitHub Pages.

Shell 42 7 Updated Sep 22, 2025

A simple Bash script for making local backups with different views.

Shell 34 5 Updated Apr 25, 2019

Application for semi-automated genomic annotation.

Shell 17 7 Updated Sep 3, 2025

A methodological framework to conduct a calibrated gene-based rare variant association test by leveraging the genome aggregation database (gnomAD) as an external control dataset

Shell 9 1 Updated Mar 4, 2023
Shell 4 1 Updated Apr 2, 2024

Genotyping Array Pipeline

Shell 3 8 Updated Oct 24, 2024

OpenBEL Eclipse repository

Shell 3 3 Updated Dec 11, 2014

Easy to run pipeline for CNV calling

Shell 1 1 Updated Oct 7, 2025

This repo contains a workflow that takes sequencing output from an Illumina sequencer, uses bcl2fastq to demultiplex reads and convert them to FASTQ format, and runs basic quality control.

Shell 1 1 Updated Jan 13, 2025

derfinder analysis of LIBD post-mortem brain data (36 samples)

Shell 1 1 Updated Aug 23, 2019