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Starred repositories

14 stars written in Java
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Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases

Java 4,151 3,115 Updated Dec 19, 2025

Official code repository for GATK versions 4 and up

Java 1,894 622 Updated Dec 18, 2025

Jasmine: SV Merging Across Samples

Java 233 18 Updated Dec 20, 2024

A Tool to Annotate and Prioritize Exome Variants

Java 233 59 Updated Dec 12, 2025

Simple test framework for Nextflow pipelines

Java 173 36 Updated Nov 3, 2025
Java 91 19 Updated Jul 6, 2025

Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

Java 82 49 Updated Sep 28, 2024

HAL (Hybrid Automata Library) is the one-stop shop for all of your hybrid modeling needs

Java 38 13 Updated Aug 19, 2024

Short Time-series Expression Miner (STEM) and Dynamic Regulatory Events Miner (DREM)

Java 21 5 Updated Jul 5, 2020

HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data

Java 20 3 Updated Apr 25, 2017

Implementation of Reverse Causal Reasoning (RCR) on the OpenBEL platform.

Java 10 3 Updated Jun 21, 2022

NOT MAINTAINED: Enables Eclipse integration with the Bioligical Expression Language (BEL)

Java 5 3 Updated Oct 13, 2015

Build Docker container for working in R.

Java 2 1 Updated Nov 20, 2021
Java 1 Updated Sep 27, 2022