The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

Manatee: detection and quantification of small non-coding RNAs from next-generation sequencing data

Adaption of the original PennCNV algorithm for whole-genome sequencing data

Signaling-pathway-perturbation-analysis