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Starred repositories

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Run your GitHub Actions locally 🚀

Go 67,662 1,806 Updated Dec 1, 2025

A tool for exploring each layer in a docker image

Go 52,918 1,930 Updated Dec 15, 2025

GitHub’s official command line tool

Go 41,692 7,613 Updated Dec 15, 2025

Render markdown on the CLI, with pizzazz! 💅🏻

Go 21,877 529 Updated Dec 15, 2025

A flexible event/agent & automation system with lots of bees 🐝

Go 6,467 334 Updated Feb 25, 2023

Apptainer: Application containers for Linux

Go 1,665 164 Updated Dec 16, 2025

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,489 174 Updated Dec 4, 2025

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

Go 451 32 Updated May 6, 2025

annotate a VCF with other VCFs/BEDs/tabixed files

Go 391 56 Updated Aug 30, 2025

Lollipop-style mutation diagrams for annotating genetic variations.

Go 195 72 Updated Sep 20, 2024

CLI tool to manage the download of large quantities of files from DNAnexus

Go 18 9 Updated Dec 8, 2025