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A Python-embedded modeling language for convex optimization problems.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
The second version of the Kraken taxonomic sequence classification system
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
NGSNGS: Next generation simulator for next generation sequencing data
Fast and space-efficient taxonomic classification of long reads
Classes and functions demonstrating some of the tricky polymorphic behaviour of C++