Skip to content
View Midnighter's full-sized avatar

Organizations

@opencobra @AGHerwig @metacollect-org @PrinciplesInCellPhysiologyScholars @opentecr

Block or report Midnighter

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Starred repositories

Showing results

A script that gets specified number of merged PRs from Github GraphQl and anonymizes sensitive data

Python 3 Updated Dec 6, 2025

Repository of the Website about Dynamic Consistency Boundaries

PHP 20 10 Updated Dec 16, 2025

A python library for metabolic networks sampling and analysis

Python 62 48 Updated Aug 30, 2025

Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable,…

Python 10,676 981 Updated Dec 19, 2025

original documents on topics related to software project management

TeX 17 1 Updated May 25, 2022

Download FASTQ files from SRA or ENA repositories.

Python 353 26 Updated Dec 6, 2025

A grammar of graphics for comparative genomics

R 736 68 Updated Nov 14, 2025

🎨 colormaps cooked for your palate

Python 31 1 Updated Oct 19, 2024

MGnify genome analysis pipeline

Python 109 22 Updated Dec 15, 2025

Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.

Python 329,763 53,683 Updated Nov 3, 2025

Sparnatural : visual knowledge graph explorer with SPARQL, in the browser, configurable with SHACL

TypeScript 278 49 Updated Dec 16, 2025

Structurizr DSL

Java 1,418 258 Updated Jan 10, 2024

Simple test framework for Nextflow pipelines

Java 173 36 Updated Nov 3, 2025

A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

Nextflow 32 8 Updated Jun 3, 2025

A very fast Python docstring linter

Python 202 21 Updated Nov 26, 2025

The official repository for the AiiDA code

Python 516 239 Updated Dec 19, 2025

A simple & elegant experiment tracking framework that integrates persistence logic & best practices directly into Python

Jupyter Notebook 535 15 Updated Jan 14, 2025

Assembly and annotation of metatranscriptomic or metagenomic data for prokaryotic, eukaryotic and viruses.

Nextflow 34 17 Updated Nov 20, 2025

Orchestrating Microbiome Analysis

TeX 105 53 Updated Dec 8, 2025

microbiome data simulation package

R 22 8 Updated Oct 2, 2025

Microbiome analysis

R 53 33 Updated Dec 14, 2025

This repository hosts a large collection of Nextflow snippets

56 1 Updated Jan 26, 2025

Nextflow runs monitoring and organisation UI

TypeScript 77 13 Updated Sep 20, 2024

data load tool (dlt) is an open source Python library that makes data loading easy 🛠️

Python 4,706 410 Updated Dec 19, 2025

Meson PEP 517 Python build backend

Python 170 82 Updated Nov 19, 2025

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.

Rust 32,414 1,942 Updated Dec 5, 2025

Fast and space-efficient taxonomic classification of long reads

C++ 43 2 Updated Aug 25, 2025

A Python DSL inspired by Structurizr, intended for generating C4 diagrams

Python 139 23 Updated Mar 6, 2024

an ambient intelligence library

Python 6,019 390 Updated Dec 19, 2025

Promptimize is a prompt engineering evaluation and testing toolkit.

Python 487 43 Updated Dec 8, 2025
Next