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Starred repositories

18 stars written in R
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dplyr: A grammar of data manipulation

R 5,024 2,133 Updated Apr 7, 2026

An interactive graphing library for R

R 2,666 641 Updated Apr 16, 2026

šŸŽ„Visualization and annotation of phylogenetic trees

R 927 184 Updated Apr 9, 2026

Data table backend for dplyr

R 675 61 Updated Feb 11, 2026

Inferring CNV from Single-Cell RNA-Seq

R 663 179 Updated Nov 14, 2025

A fresh approach to string manipulation in R

R 660 195 Updated Nov 4, 2025

Tidy interface to 'data.table'

R 476 32 Updated Jan 13, 2026

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

R 250 15 Updated Apr 27, 2026

🦠 A comprehensive R package for deep mining microbiome

R 192 37 Updated Apr 2, 2026

Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

R 134 38 Updated Apr 28, 2026

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)

R 128 23 Updated Apr 10, 2026

Visualisation of official UK COVID-19 data

R 58 5 Updated Jun 23, 2020

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

R 33 30 Updated Jan 20, 2026

R package to access the genomics and epidemiology data and Research Library metadata compiled and standardized on outbreak.info.

R 21 11 Updated Mar 5, 2023

R library for visualizing (social science) sequence data using ggplot2

R 16 2 Updated Nov 16, 2025

Algorithms for TB molecular epidemiology analysis

R 11 7 Updated Feb 2, 2022

Interactive R Package for Automation of Chimerism Test Data Analysis

R 3 2 Updated Apr 5, 2020