Starred repositories
A genome completeness evaluation tool based on miniprot
.NET is a cross-platform runtime for cloud, mobile, desktop, and IoT apps.
⚡ Dynamically generated stats for your github readmes
🚀🧠💬 Supercharged Custom Instructions for ChatGPT (non-coding) and ChatGPT Advanced Data Analysis (coding).
Playing Pokemon Red with Reinforcement Learning
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
Read-based phasing of genomic variants, also called haplotype assembly
Tool to plot synteny and structural rearrangements between genomes
Pilon is an automated genome assembly improvement and variant detection tool
Nanopore demultiplexing, QC and alignment pipeline
JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
Simple, fast, safe, compiled language for developing maintainable software. Compiles itself in <1s with zero library dependencies. Supports automatic C => V translation. https://vlang.io
CDC OpenViz is a library of React packages for data visualization.
C++ Library Manager for Windows, Linux, and MacOS
Eclipse SUMO is an open source, highly portable, microscopic and continuous traffic simulation package designed to handle large networks. It allows for intermodal simulation including pedestrians a…
🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.
Catalog of genomic indexes freely available from public clouds
A natural language interface for computers
Tensors and Dynamic neural networks in Python with strong GPU acceleration
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A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Fast and accurately polish the genome generated by long reads.
🍺 The missing package manager for macOS (or Linux)