Unified access to several second-generation deconvolution methods

Deep Learning based cell composition analysis with Scaden.

xCell 2.0: Robust Cell Type Enrichment Analysis

reticulate-free single cell format conversion

Workflow to perform Differential Expression Gene analysis from raw fastq files.

Meta-Omics Software for Community Analysis

Multi-subject Single Cell Deconvolution

Chris Titus Tech's Windows Utility - Install Programs, Tweaks, Fixes, and Updates

This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

Command-line tool for the visualization of splicing events across multiple samples

SUPPA: Fast quantification of splicing and differential splicing

teaching material

Beginner Python Course

Oncogenicity Variant Interpreter for somatic variants

ASCAT R package

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

WebApps in pure Python. No JavaScript, HTML and CSS needed

Run your GitHub Actions locally 🚀

Package management made easy

Text Only Genome Viewer!

Bookmarks Extension for Visual Studio Code

Interfaces for HDF5-based Single Cell File Formats

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

Apptainer: Application containers for Linux

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

Repository to host tool-specific module files for the Nextflow DSL2 community!

Free monospaced font with programming ligatures