Make Complex Heatmaps

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

Circular visualization in R

🍁 Make waffle (square pie) charts in R

A grammar of graphics for comparative genomics

Multi-subject Single Cell Deconvolution

Record plots generated during an R session and replay as a gif!

Ggplot picture previewer

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Fast expectation maximization for microbial source tracking

R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

Examples and data for geom_net

Optimal cutpoints in R: determining and validating optimal cutpoints in binary classification

Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

QDNAseq package for Bioconductor

Compare different differential abundance and expression methods

MaAsLin3: Microbiome Multivariate Association with Linear Models

Blurry Point Geom for ggplot2

Differential analysis of multi-omics data based on the Tweedie distribution

Time-Course Multi-Omics data integration

Metagenomics calibration R package

R package for fetching and parsing data of the Human Microbiome Compendium

Miscellaneous R Scripts

Dissimilarity Overlap Curve analysis

Repository for data and code used in the manuscript "Comparison study of differential abundance testing methods using two large Parkinson disease gut microbiome datasets derived from 16S amplicon s…

Calculates tissue specificity of genes from RNA-seq data

kmer- and matrix-factorization-based classifier for metagenomics data

Prokounter

Check your mock communities from microbiome sequencing experiments