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niekwit/README.md

Hi there, I'm Niek Wit πŸ‘‹

πŸš€ About Me

I am a bioinformatician at the University of Cambridge with an extensive wetlab background. I am passionate about reproducible research and open-source software.

πŸ› οΈ Technologies & Tools

  • Python
  • R
  • Bash
  • Snakemake
  • Docker / Apptainer
  • Git

πŸ“« Connect with me

LinkedIn

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  1. damid-seq damid-seq Public

    DamMapper: Snakemake workflow for DamID-Seq analysis

    Python 4

  2. gps-orfeome gps-orfeome Public

    GPSW: A Snakemake workflow for GPS-ORFeome screens

    Python 4

  3. snakefetch snakefetch Public

    A tool to fetch workflow and config files from a Snakemake repository on GitHub

    Python 5

  4. crispr-screens crispr-screens Public

    Snakemake workflow for CRISPR-Cas9 screen analysis

    Python 6 1

  5. rna-seq-star-tetranscripts rna-seq-star-tetranscripts Public

    Snakemake workflow for transposable element RNA-Seq using TEtranscripts

    Python 4

  6. rna-seq-salmon-deseq2 rna-seq-salmon-deseq2 Public

    Snakemake workflow for RNA-Seq differential transcript analysis using Salmon/Deseq2

    Python 5 1