A method for calculating single cell entropy and reconstructing cell differentiation lineage using single-cell RNA-seq data

Visualise Clusterings at Different Resolutions

A pipeline for profiling TE-derived small RNAs

R toolkit for single cell genomics

A tool for semi-automatic cell type classification

Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

An R/Bioconductor package for DamID differential binding, gene transcription and chromatin accessibility analysis.

A DSL for data-driven computational pipelines

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

The official Python library for the OpenAI API

A 21 century R console

Pretty heatmaps

Create curved text paths in ggplot2

A Fasta linter/validator

The uncompromising Python code formatter

Python interface to Graphviz's Dot language

R formatter and language server

A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

FUSE filesystem over Google Drive

SortMeRNA: next-generation sequence filtering and alignment tool

A high-performance implementation of Wilkinson formulas for Python.

Package management made easy

🎨🎨🎨 Collection of most color palettes in a single R package

💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Package for fetching metadata and downloading data from SRA/ENA/GEO