R toolkit for single cell genomics

🎨🎨🎨 Collection of most color palettes in a single R package

🎨 Visualisation toolbox for beautiful and publication-ready figures

An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

A grammar of graphics for comparative genomics

Create curved text paths in ggplot2

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Pretty heatmaps

Quick mining and visualization of NGS data by integrating genomic databases

🎯 ChIP peak Annotation, Comparison and Visualization

Visualise Clusterings at Different Resolutions

Publication-quality sequence logos in R

Genomic Data Retrieval with R

This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

Generate IGV style locus tracks from bigWig files in R

Area-Proportional Euler and Venn Diagrams with Ellipses

Updated implementation of the GSEA-P R application for modern R distributions

Tools for Descriptive Statistics and Exploratory Data Analysis

An R interface to enrichR

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length …

Unsupervised correction of gene independent cell responses to CRISPR-cas9

Genomic coordinates of problematic genomic regions as GRanges

Tools for assessing clustering robustness

Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

A shiny-based web tool for interactive analysis of DepMap data

A tool to facilitate comparative visualisation of CLIP data

Phenotype detection in pooled genetic perturbation screens