The uncompromising Python code formatter

The official Python library for the OpenAI API

Python composable command line interface toolkit

A simple and efficient tool to parallelize Pandas operations on all available CPUs

This is the development home of the workflow management system Snakemake. For general information, see

A 21 century R console

Python and tab completion, better together.

Python interface to Graphviz's Dot language

Multi-featured system monitor

dplyr-style piping operations for pandas dataframes

Python library to handle Gene Ontology (GO) terms

python module to plot beautiful and highly customizable genome browser tracks

YAML for command line

MACS -- Model-based Analysis of ChIP-Seq

Tools to process and analyze deep sequencing data.

Gene Set Enrichment Analysis in Python

A tool to find sequencing data and metadata from public databases.

Cutadapt removes adapter sequences from sequencing reads

Tools for handling Unique Molecular Identifiers in NGS data sets

Performant Pythonic GenomicRanges

Efficient pythonic random access to fasta subsequences

A tool for semi-automatic cell type classification

ENCODE ATAC-seq pipeline

A high-performance implementation of Wilkinson formulas for Python.

genes and genomes at your fingertips

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

Grayskull 💀 - Recipe generator for Conda

RNA-seq workflow using STAR and DESeq2

Package for fetching metadata and downloading data from SRA/ENA/GEO