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smallRNA-seq Public
Snakemake workflow for small RNA-seq analysis
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methyl-seq Public
Snakemake workflow for bisulphite sequencing analysis
Python MIT License UpdatedNov 24, 2025 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
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gps-orfeome Public
GPSW: A Snakemake workflow for GPS-ORFeome screens
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crispr-screens Public
Snakemake workflow for CRISPR-Cas9 screen analysis
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damid-seq Public
DamMapper: Snakemake workflow for DamID-Seq analysis
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gps-orfeome-tools Public
Extra tools for Global Protein Stability profiling analysis
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rna-seq-star-tetranscripts Public
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
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rna-seq-salmon-deseq2 Public
Snakemake workflow for RNA-Seq differential transcript analysis using Salmon/Deseq2
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rna-seq-star-deseq2 Public
Snakemake workflow for RNA-Seq differential transcript analysis using STAR/Deseq2
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clipseq Public
Forked from goodwright/clipseqThe primary analysis pipeline for CLIP samples.
Nextflow MIT License UpdatedMay 14, 2024 -
snakefetch Public
A tool to fetch workflow and config files from a Snakemake repository on GitHub
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cut_and_run Public
Snakemake workflow for Cut & Run
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find_peaks_py Public
Forked from TeddyHuang-00/find_peaksPython port of original find_peaks program in Perl. Find and merge significant peaks based on false discovery rate.
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eclipdemux Public
Forked from YeoLab/eclipdemuxdemultiplex utility for eclip raw fastq files (process eclip barcodes and ramdomers)
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