Lists (1)
Stars
A DSL for data-driven computational pipelines
RNA-seq workflow using STAR and DESeq2
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
The official Python library for the OpenAI API
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
Official code repository for GATK versions 4 and up
Config files used to define parameters specific to compute environments at different Institutions
This is the development home of the workflow management system Snakemake. For general information, see
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
A tool for semi-automatic cell type classification
A Github action for running a Snakemake workflow
Tools for Descriptive Statistics and Exploratory Data Analysis
Tools for assessing clustering robustness
A quality control analysis tool for high throughput sequencing data
Cutadapt removes adapter sequences from sequencing reads
An R/Bioconductor package for DamID differential binding, gene transcription and chromatin accessibility analysis.
Python package with helper tools for the nf-core community.
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
This is the development home of the Snakemake wrapper repository, see