Run your GitHub Actions locally 🚀

The uncompromising Python code formatter

The official Python library for the OpenAI API

Python composable command line interface toolkit

✨ Finder Toolbar app for macOS to open the current directory in Terminal, iTerm, Hyper or Alacritty.

Package management made easy

FUSE filesystem over Google Drive

A simple and efficient tool to parallelize Pandas operations on all available CPUs

A DSL for data-driven computational pipelines

This is the development home of the workflow management system Snakemake. For general information, see

R toolkit for single cell genomics

YouTube script to add the new Ads list for Pi-hole

A 21 century R console

RNA-seq aligner

A versatile pairwise aligner for genomic and spliced nucleotide sequences

Tool for creating snapshots and remote backups of btrfs subvolumes

Official code repository for GATK versions 4 and up

Apptainer: Application containers for Linux

Python and tab completion, better together.

Toolkit for processing sequences in FASTA/Q formats

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

🎨🎨🎨 Collection of most color palettes in a single R package

bedtools - the swiss army knife for genome arithmetic

The complete sequence of a human genome

Python interface to Graphviz's Dot language

Multi-featured system monitor

🎨 Visualisation toolbox for beautiful and publication-ready figures

dplyr-style piping operations for pandas dataframes

Trinity RNA-Seq de novo transcriptome assembly