R Package for 2D and 3D mapping and data visualization

H2O is an Open Source, Distributed, Fast & Scalable Machine Learning Platform: Deep Learning, Gradient Boosting (GBM) & XGBoost, Random Forest, Generalized Linear Modeling (GLM with Elastic Net), K…

SRA Tools

R toolkit for single cell genomics

Enhancing {ggplot2} plots with statistical analysis 📊📣

Bayesian Data Analysis course at Aalto

Single-cell analysis in Python. Scales to >100M cells.

RStan, the R interface to Stan

Easy interactive web applications with R

Official repo for the #tidytuesday project

CmdStanR: the R interface to CmdStan

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.

Interactive Cytometry Data Analysis

Graph and network visualization using tabular data in R

Differential expression of RNA-seq data using the Negative Binomial

Making Protein folding accessible to all!

A library of free open source icons for science illustrations in biology and chemistry

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

Regression Modeling Strategies

Single cell trajectory detection

Run Stan models in the browser

The Stan Math Library is a C++ template library for automatic differentiation of any order using forward, reverse, and mixed modes. It includes a range of built-in functions for probabilistic model…

An implementation of the Grammar of Graphics in R

Open source code for AlphaFold 2.

A grammar of graphics for comparative genomics

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

MACS -- Model-based Analysis of ChIP-Seq

bayesplot R package for plotting Bayesian models

CmdStan, the command line interface to Stan

Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.