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This repository contains implementations and illustrative code to accompany DeepMind publications

Jupyter Notebook 14,434 2,779 Updated Aug 22, 2025

Open source code for AlphaFold 2.

Python 13,933 2,501 Updated Oct 31, 2025

Official repo for the #tidytuesday project

HTML 7,788 2,526 Updated Nov 3, 2025

H2O is an Open Source, Distributed, Fast & Scalable Machine Learning Platform: Deep Learning, Gradient Boosting (GBM) & XGBoost, Random Forest, Generalized Linear Modeling (GLM with Elastic Net), K…

Jupyter Notebook 7,356 2,024 Updated Nov 7, 2025

An implementation of the Grammar of Graphics in R

R 6,820 2,108 Updated Nov 4, 2025

Easy interactive web applications with R

R 5,550 1,877 Updated Nov 6, 2025

Statistical Rethinking course winter 2022

R 4,099 438 Updated Mar 15, 2022

pagodo (Passive Google Dork) - Automate Google Hacking Database scraping and searching

Python 3,145 529 Updated Sep 29, 2025

Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.

C++ 2,694 378 Updated Oct 28, 2025

R toolkit for single cell genomics

R 2,555 975 Updated Nov 7, 2025

Making Protein folding accessible to all!

Jupyter Notebook 2,495 657 Updated Nov 5, 2025

Statistical Rethinking Course for Jan-Mar 2023

R 2,346 264 Updated Nov 28, 2023

Statistical Rethinking course and book package

R 2,309 615 Updated Aug 23, 2024

Single-cell analysis in Python. Scales to >100M cells.

Python 2,248 675 Updated Nov 6, 2025

Bayesian Data Analysis course at Aalto

TeX 2,238 567 Updated Nov 6, 2025

Enhancing {ggplot2} plots with statistical analysis πŸ“ŠπŸ“£

R 2,141 203 Updated Oct 13, 2025

R Package for 2D and 3D mapping and data visualization

R 2,134 217 Updated Nov 6, 2025

Force-directed graph layout using velocity Verlet integration.

JavaScript 1,910 390 Updated Dec 30, 2023

Create Blogs and Websites with R Markdown

R 1,776 326 Updated Oct 28, 2025

Graph and network visualization using tabular data in R

R 1,727 249 Updated Apr 29, 2025

A library of free open source icons for science illustrations in biology and chemistry

Vue 1,554 91 Updated Nov 5, 2025

brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan

R 1,366 203 Updated Oct 31, 2025

SRA Tools

C 1,268 270 Updated Nov 6, 2025

RStan, the R interface to Stan

R 1,061 270 Updated Oct 30, 2025

🎨🎨🎨 Collection of most color palettes in a single R package

R 1,016 51 Updated Jun 24, 2024

The complete sequence of a human genome

997 100 Updated Jul 14, 2025

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

HTML 881 222 Updated Mar 27, 2023

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

C++ 843 174 Updated May 29, 2024

The Stan Math Library is a C++ template library for automatic differentiation of any order using forward, reverse, and mixed modes. It includes a range of built-in functions for probabilistic model…

C++ 797 198 Updated Nov 4, 2025

A package for plotting maps in R with ggplot2

R 777 237 Updated Aug 31, 2025
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