Stars
Single-cell Mutual Information-based Network Engineering Ranger
A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic stem and progenitor cells and differentiated populations
This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 10x libraries
Pipeline for processing of GoT-ChA genotyping data and downstream analysis
mutation(barcode) caller for 10x single cell data
Run Stan models in the browser
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
The Stan Math Library is a C++ template library for automatic differentiation of any order using forward, reverse, and mixed modes. It includes a range of built-in functions for probabilistic model…
library of C++ functions that support applications of Stan in Pharmacometrics
Supplementary material for Torsten tutorial (part 1) submission
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.
Making Protein folding accessible to all!
Color Schemes based around artwork and the Museum of Modern Art.
Systematic functional screening of chromatin factors identifies strong lineage and disease dependencies in normal and malignant haematopoiesis.
Additional univariate and multivariate distributions
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
CellPhy: accurate and fast probabilistic inference of single-cell phylogenies
Joint sequence and structure generation with RoseTTAFold sequence space diffusion
Bayesian Data Analysis course at Aalto