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🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

The Stan Math Library is a C++ template library for automatic differentiation of any order using forward, reverse, and mixed modes. It includes a range of built-in functions for probabilistic model…

A fast and sensitive gapped read aligner

CmdStan, the command line interface to Stan

Filtering of Poison noise on a single-cell RNA-seq UMI count matrix

library of C++ functions that support applications of Stan in Pharmacometrics

Additional univariate and multivariate distributions

Supplementary material for Torsten tutorial (part 1) submission