Open source code for AlphaFold 2.

pagodo (Passive Google Dork) - Automate Google Hacking Database scraping and searching

Single-cell analysis in Python. Scales to >100M cells.

MACS -- Model-based Analysis of ChIP-Seq

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

Joint sequence and structure generation with RoseTTAFold sequence space diffusion

Single cell perturbation prediction

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

A scalable SCENIC workflow for single-cell gene regulatory network analysis

Quantifying experimental perturbations at single cell resolution

mutation(barcode) caller for 10x single cell data

Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein

A tool for classifiying short-read sequencing data from xenograft samples.