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Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtool…
Fast, efficiently stored Trie for Python. Uses libdatrie.
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
Cython bindings and Python interface to HMMER3.
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!