A simple static site generator for photoessays

✨ Mojolicious - Perl real-time web framework

⚡ ♒ Rapid prokaryotic genome annotation

Trinity RNA-Seq de novo transcriptome assembly

Code and documentation for setting up and managing a tilde.club server

✂️ ⚡ Rapid haploid variant calling and core genome alignment

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Extensive de-novo TE Annotator

Rapid large-scale prokaryote pan genome analysis

A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

🔬 ♌ Bacterial ribosomal RNA predictor

⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads

Genome Assembly and Annotation Service code

A scalable high-throughput metabolic and biogeochemical functional trait profiler

🌳 Create a tree using Mash distances

Biopieces is a bioinformatic framework of tools easily used and easily created.

💾 📃 "Reads to report" for public health and clinical microbiology

🐉 🪰 Assemble bacterial isolate genomes from Nanopore reads

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

Long-read metagenomic analysis

A toolbox for pangenome analysis and threshold evaluation.

An accurate and ultra-fast hybrid genome assembler

Phylogenetic and taxonomic analysis for genomes and metagenomes

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish