Stars
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate betwe…
A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.
PyByntic extends Pydantic with binary-typed fields and automatic byte-level serialization. Define models using familiar Pydantic syntax and turn them into compact binary payloads with full control …
Similarity networks of biosynthetic gene clusters
Making Protein Language Modeling Accessible to All Biologists
Detect Electron apps on mac where the Electron hasn't yet been updated to fix the system wide lag
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
Python grammar for tree-sitter
A simple Rust profiler that shows exactly where your code spends time and allocates
A native Rust implementation of DiskANN (Disk-based Approximate Nearest Neighbor search) 🦀
SQLite-Vector is a cross-platform, ultra-efficient SQLite extension that brings vector search capabilities to your embedded database.
genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF
A docker image for the pixi package manager 🐳 📦
Production-ready KV-backed HNSW implementation in Rust using LMDB
Extensible, parallel implementations of t-SNE
A terminal user interface (TUI) application for navigating and viewing HDF5 files
Get protein embeddings from protein sequences
Hunt and resolve merge conflicts directly in Neovim — fast and simple.
Unofficial Python client library for Semantic Scholar APIs.
Making Protein folding accessible to all!