Lists (16)
de novo assembly
trio assembly, haplotypes resolvedGraph Genomes
✨ Inspiration
Lectures
Teaching moments and lectures, guides…LiftOver annotations
Everything about the Liftaover problem, all types of resources/reposLinux 🐧
Long-read Error Correction
Typically Nanopore Simplex long-read Error CorrectionMacOS
Mac apps et alMethylation
methylation calling, PacBio HiFi & NanoporeNotes – Memos MoeMemos …
Mostly Memos self-hosted and iOS app MoeMemosOpenWRT
PitWeb.Survey
Survey analysisRepeat Finding
SLU et al
List for any type of SLU connection reposSLURM
slurm resource managementVariant Calling
Stars
Chromosome-level synteny plotting using orthologous regions
Dfam Transposable Element Tools Docker container.
Tools for fast and flexible genome assembly scaffolding and improvement
Tandem Repeats Finder: a program to analyze DNA sequences
lh3 / TRF-mod
Forked from Benson-Genomics-Lab/TRFTandem Repeats Finder: a program to analyze DNA sequences
Tools for manipulating sequence graphs in the GFA and rGFA formats
Calculate N50 from FASTA and FASTX files
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
A collection of helper scripts for everyday use of SLURM
This is the curated version of the Open Data survey and Pigweb analysis. You can use this Rmarkdown template to
Programming language trends in bioinformatics (2013–2025)
Various documents related to developments in the BPC
A highly customizable homepage (or startpage / application dashboard) with Docker and service API integrations.
Temperature sensors data for the LuCI status page (OpenWrt webUI)
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
TheBGAcademy 2024: Exploring Satellite DNA using ModDotPlot
A Python CLI script that converts folder(s) of MP3 chapters into an M4B audiobook, optionally embedding chapter metadata and cover art. It can also fetch metadata from Open Library (e.g., title, au…