Constructing a pangenome gene graph

SRF: Satellite Repeat Finder

Various documents related to developments in the BPC

A highly customizable homepage (or startpage / application dashboard) with Docker and service API integrations.

Temperature sensors data for the LuCI status page (OpenWrt webUI)

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

TheBGAcademy 2024: Exploring Satellite DNA using ModDotPlot

Simple Python version management

A Python CLI script that converts folder(s) of MP3 chapters into an M4B audiobook, optionally embedding chapter metadata and cover art. It can also fetch metadata from Open Library (e.g., title, au…

adapter trimmer for Oxford Nanopore reads

Plotting scripts for long read sequencing data

Automatic headphone equalization from frequency responses

Post-verkko graph and assembly curation in Python.

A network traffic monitoring application for OpenWrt

The minimalist Markdown viewer for busy terminals. Pure Bash. Zero dependencies. Works everywhere.

Automated Apple Music Lossless Sample Rate Switching for Audio Devices on Macs.

Methylatino phasing using PacBio CCS reads

Detecting DNA methylation from PacBio CCS reads

Foreign Contamination Screening caller scripts and documentation

Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).

The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

Ultra-fast preprocessing and quality control for long-read sequencing data

A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

RepeatMasker Analysis Pipeline

Convert RepeatMasker ".out" file into a gff3 with colors!!!

read and analyse RepeatMasker output

CrowdSec - the open-source and participative security solution offering crowdsourced protection against malicious IPs and access to the most advanced real-world CTI.