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  • Swedish University of Agricultural Sciences
  • Uppsala, Sweden
  • 07:57 (UTC +01:00)

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27 stars written in Python
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Daemon to ban hosts that cause multiple authentication errors

Python 16,864 1,458 Updated Feb 2, 2026

Automatic headphone equalization from frequency responses

Python 15,383 2,531 Updated Jul 20, 2025

Backup and keep your application settings in sync.

Python 15,096 934 Updated Jan 12, 2026

Powerline is a statusline plugin for vim, and provides statuslines and prompts for several other applications, including zsh, bash, tmux, IPython, Awesome and Qtile.

Python 14,701 1,008 Updated Sep 30, 2024

Tool for partial deblobbing of Intel ME/TXE firmware images

Python 4,894 290 Updated May 28, 2024

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Python 3,620 770 Updated Oct 21, 2025

This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.

Python 1,672 221 Updated Feb 6, 2026

Fast genome-wide functional annotation through orthology assignment

Python 697 117 Updated Jun 18, 2025

Official home of genome aligner based upon notion of Cactus graphs

Python 651 123 Updated Feb 4, 2026

Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.

Python 381 34 Updated Feb 6, 2026

pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)

Python 284 42 Updated Oct 18, 2024

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

Python 143 31 Updated Oct 28, 2023

🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

Python 120 10 Updated Nov 21, 2025

Detecting DNA methylation from PacBio CCS reads

Python 84 12 Updated Apr 8, 2025

A tool for evaluate long-read de novo assembly results

Python 48 4 Updated Aug 28, 2024

A Python CLI script that converts folder(s) of MP3 chapters into an M4B audiobook, optionally embedding chapter metadata and cover art. It can also fetch metadata from Open Library (e.g., title, au…

Python 32 4 Updated Feb 1, 2026

An automation tool that connects to Kivra (a Swedish digital mailbox service) to download and organize your digital receipts and letters, helping you maintain a local backup of your important docum…

Python 17 2 Updated Oct 27, 2025

Tool to rapidly package and import Apple's XProtect definitions for distribution to clients

Python 16 3 Updated Feb 20, 2013

Misassembly Identifier

Python 15 Updated Feb 4, 2026

The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

Python 12 12 Updated Feb 6, 2026

A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

Python 9 8 Updated Feb 6, 2026
Python 6 Updated Jan 31, 2026

A Model Context Protocol server for retrieving -omics data from various online sources.

Python 4 Updated Jul 13, 2025
Python 2 Updated Sep 23, 2024

Repository including scripts and workflows for "Size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle"

Python 2 1 Updated Mar 7, 2023

vi-like gff reader

Python 1 Updated Aug 10, 2025
Python 1 Updated Oct 5, 2024