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Swedish University of Agricultural Sciences
- Uppsala, Sweden
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07:57
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Lists (15)
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de novo assembly
trio assembly, haplotypes resolvedGraph Genomes
✨ Inspiration
Lectures
Teaching moments and lectures, guides…LiftOver annotations
Everything about the Liftaover problem, all types of resources/reposLinux 🐧
Long-read Error Correction
Typically Nanopore Simplex long-read Error CorrectionMacOS
Mac apps et alMethylation
methylation calling, PacBio HiFi & NanoporeNotes – Memos MoeMemos …
Mostly Memos self-hosted and iOS app MoeMemosOpenWRT
PitWeb.Survey
Survey analysisSLU et al
List for any type of SLU connection reposSLURM
slurm resource managementVariant Calling
Stars
Daemon to ban hosts that cause multiple authentication errors
Automatic headphone equalization from frequency responses
Backup and keep your application settings in sync.
Powerline is a statusline plugin for vim, and provides statuslines and prompts for several other applications, including zsh, bash, tmux, IPython, Awesome and Qtile.
Tool for partial deblobbing of Intel ME/TXE firmware images
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
Fast genome-wide functional annotation through orthology assignment
Official home of genome aligner based upon notion of Cactus graphs
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies basecaller (Albacore/Guppy)
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
ChongLab / Inspector
Forked from Maggi-Chen/InspectorA tool for evaluate long-read de novo assembly results
A Python CLI script that converts folder(s) of MP3 chapters into an M4B audiobook, optionally embedding chapter metadata and cover art. It can also fetch metadata from Open Library (e.g., title, au…
An automation tool that connects to Kivra (a Swedish digital mailbox service) to download and organize your digital receipts and letters, helping you maintain a local backup of your important docum…
Tool to rapidly package and import Apple's XProtect definitions for distribution to clients
The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.
A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).
A Model Context Protocol server for retrieving -omics data from various online sources.
Repository including scripts and workflows for "Size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle"